Genomic Characterization of Parengyodontium torokii sp. nov., a Biofilm-Forming Fungus Isolated from Mars 2020 Assembly Facility.
Ceth W ParkerMarcus de Melo TeixeiraNitin K SinghHuzefa A RajaKristof B CankGiada SpigolonNicholas H OberliesBridget Marie BarkerJason E StajichChristopher E MasonKasthuri VenkateswaranPublished in: Journal of fungi (Basel, Switzerland) (2022)
A fungal strain (FJII-L10-SW-P1) was isolated from the Mars 2020 spacecraft assembly facility and exhibited biofilm formation on spacecraft-qualified Teflon surfaces. The reconstruction of a six-loci gene tree (ITS, LSU, SSU, RPB1 and RPB2 , and TEF1 ) using multi-locus sequence typing (MLST) analyses of the strain FJII-L10-SW-P1 supported a close relationship to other known Parengyodontium album subclade 3 isolates while being phylogenetically distinct from subclade 1 strains. The zig-zag rachides morphology of the conidiogenous cells and spindle-shaped conidia were the distinct morphological characteristics of the P. album subclade 3 strains. The MLST data and morphological analysis supported the conclusion that the P. album subclade 3 strains could be classified as a new species of the genus Parengyodontium and placed in the family Cordycipitaceae. The name Parengyodontium torokii sp. nov. is proposed to accommodate the strain, with FJII-L10-SW-P1 as the holotype. The genome of the FJII-L10-SW-P1 strain was sequenced, annotated, and the secondary metabolite clusters were identified. Genes predicted to be responsible for biofilm formation and adhesion to surfaces were identified. Homology-based assignment of gene ontologies to the predicted proteome of P. torokii revealed the presence of gene clusters responsible for synthesizing several metabolic compounds, including a cytochalasin that was also verified using traditional metabolomic analysis.
Keyphrases
- biofilm formation
- escherichia coli
- pseudomonas aeruginosa
- genome wide
- staphylococcus aureus
- candida albicans
- copy number
- genome wide identification
- dna methylation
- cystic fibrosis
- induced apoptosis
- long term care
- cell cycle arrest
- gene expression
- single cell
- genome wide analysis
- electronic health record
- genome wide association study
- endoplasmic reticulum stress
- cell death
- oxidative stress