Red sea bream iridovirus infection downregulates inflammation-related genes in the spleen of rock bream (Oplegnathus fasciatus).
Chalermkwan EurlaphanReiko NozakiMotohiko SanoKeiichiro KoiwaiIkuo HironoHidehiro KondoPublished in: Journal of fish diseases (2023)
This study investigated the kinetics of red sea bream iridovirus and host gene expression during infection in rock bream (Oplegnathus fasciatus), a species highly sensitive to the virus. After intraperitoneal injection of the viral solution at 10 4 TCID50/fish, the viral genome copy number in the spleen was 10 4.7 ± 0.2 and 10 5.9 ± 0.4 copies/μg DNA at 3 and 5 days post-injection (dpi), respectively. Using transcriptomic analyses via MiSeq, viral gene transcripts were detected at 3 and 5 dpi. Six genes including RING-finger domain-containing protein and laminin-type epidermal growth factor-like domain genes were significantly expressed at 5 dpi. Further, 334 host genes were differentially expressed compared with those before infection. Genes were clustered into four groups based on their expression profiles. Interferon-stimulated genes were more prevalent in groups showing upregulation at 5 dpi and 3 and 5 dpi. In contrast, the group showing downregulation at 3 dpi included inflammation-related genes, such as granzyme and eosinophil peroxidase genes. Downregulation of certain inflammation-related genes may contribute to the susceptibility of this fish to the virus.
Keyphrases
- genome wide
- copy number
- genome wide identification
- dna methylation
- gene expression
- growth factor
- bioinformatics analysis
- oxidative stress
- cell proliferation
- sars cov
- mitochondrial dna
- genome wide analysis
- signaling pathway
- immune response
- computed tomography
- small molecule
- nitric oxide
- single cell
- binding protein
- protein protein
- high resolution
- aqueous solution
- liquid chromatography
- label free