Raman spectroscopy and its plasmon-enhanced counterparts: A toolbox to probe protein dynamics and aggregation.
Ashish Kumar DhillonArti SharmaVikas YadavRuchi SinghTripti AhujaSanmitra BarmanSoumik SiddhantaPublished in: Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology (2023)
Protein unfolding and aggregation are often correlated with numerous diseases such as Alzheimer's, Parkinson's, Huntington's, and other debilitating neurological disorders. Such adverse events consist of a plethora of competing mechanisms, particularly interactions that control the stability and cooperativity of the process. However, it remains challenging to probe the molecular mechanism of protein dynamics such as aggregation, and monitor them in real-time under physiological conditions. Recently, Raman spectroscopy and its plasmon-enhanced counterparts, such as surface-enhanced Raman spectroscopy (SERS) and tip-enhanced Raman spectroscopy (TERS), have emerged as sensitive analytical tools that have the potential to perform molecular studies of functional groups and are showing significant promise in probing events related to protein aggregation. We summarize the fundamental working principles of Raman, SERS, and TERS as nondestructive, easy-to-perform, and fast tools for probing protein dynamics and aggregation. Finally, we highlight the utility of these techniques for the analysis of vibrational spectra of aggregation of proteins from various sources such as tissues, pathogens, food, biopharmaceuticals, and lastly, biological fouling to retrieve precise chemical information, which can be potentially translated to practical applications and point-of-care (PoC) devices. This article is categorized under: Therapeutic Approaches and Drug Discovery > Emerging Technologies Diagnostic Tools > Diagnostic Nanodevices Nanotechnology Approaches to Biology > Nanoscale Systems in Biology.
Keyphrases
- raman spectroscopy
- protein protein
- drug discovery
- amino acid
- healthcare
- single molecule
- living cells
- gene expression
- small molecule
- molecular dynamics simulations
- quantum dots
- machine learning
- risk assessment
- gold nanoparticles
- blood brain barrier
- gram negative
- density functional theory
- mass spectrometry
- multidrug resistant
- artificial intelligence
- atomic force microscopy
- antimicrobial resistance
- high resolution
- molecular dynamics
- fluorescent probe