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cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.

Lasse MeyerNils ElingBernd Bodenmiller
Published in: BMC bioinformatics (2024)
The cytoviewer package offers a rich set of features for highly multiplexed imaging data visualization in R that seamlessly integrates with the workflow for image and single-cell data analysis. It can be installed from Bioconductor via https://www.bioconductor.org/packages/release/bioc/html/cytoviewer.html . The development version and further instructions can be found on GitHub at https://github.com/BodenmillerGroup/cytoviewer .
Keyphrases
  • data analysis
  • single cell
  • electronic health record
  • high resolution
  • rna seq
  • big data
  • deep learning
  • high throughput
  • fluorescence imaging
  • psychometric properties