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The complete plastome of Cynanchum rostellatum (Apocynaceae), an indigenous plant in Korea.

Sae Hyun LeeWoojong JangEunbi KimJiseok KimHaiguang GongJong-Soo KangHyeonah ShimJee Young ParkTae-Jin Yang
Published in: Mitochondrial DNA. Part B, Resources (2022)
The climbing plant Cynanchum rostellatum (Turcz.) Liede & Khanum is widely distributed throughout Korea and Northeast Asia as a member of the Apocynaceae family. Although this plant has a high value in medicinal and industrial purposes, genetic research on this plant is insufficient. This study announces the complete plastid genome (plastome) sequence of C. rostellatum with 663× mean coverage, which was assembled using 763 Mbp short-read data generated by the Illumina HiSeq X platform. The C. rostellatum plastome was 158,018 bp in length and displayed the typical quadripartite structure composed of the large single-copy (LSC) region (89,058 bp), the small single-copy (SSC) region (18,718 bp), and a pair of inverted repeat (IR) regions (25,116 bp). A total of 129 genes have been annotated, including 84 protein-coding genes, 37 transfer RNA genes, and eight ribosomal RNA genes. Phylogenetic analysis indicated the genus Cynanchum including 12 Cynanchum plastome sequences, was monophyletic and was located within the sub-family Asclepiadoideae. Two C. rostellatum plastomes, including the plastome assembled in this study, formed a subclade and were sister to the C. thesioides plastome, whereas the other C. rostellatum , which was previously reported one, was located within the clade of C. wilfordii and C. bungei .
Keyphrases
  • genome wide
  • bioinformatics analysis
  • genome wide identification
  • dna methylation
  • gene expression
  • healthcare
  • heavy metals
  • cell wall
  • small molecule
  • electronic health record
  • single molecule
  • transcription factor