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Vibrational Energy in Proteins Correlates with Topology.

L MaggiPaolo CarloniSybille Krauß
Published in: The journal of physical chemistry letters (2018)
The exchange of vibrational energy in proteins is crucial for their function. Here, we establish a connection between quantities related to it with geometry-based properties such as the proteins' residues coordination number. This relation is proven by molecular simulation in a neuro-pharmacologically relevant transmembrane receptor. The connection demonstrated here paves the way to studies of protein allostery and conformational changes based solely on protein structure.
Keyphrases
  • molecular dynamics simulations
  • density functional theory
  • binding protein
  • single molecule
  • molecular dynamics
  • amino acid
  • raman spectroscopy
  • small molecule