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A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.

Stefanos BanosGuillaume LentenduAnna KopfTesfaye WubetFrank Oliver GlöcknerMarlis Reich
Published in: BMC microbiology (2018)
The compiled data revealed the presence of an enormous diversity of fungal 18S rRNA gene primer pairs in terms of fungal coverage, phylum spectrum and co-amplification. Therefore, the primer pair has to be carefully selected to fulfill the requirements of the individual research projects. The presented primer toolkit offers comprehensive lists of 164 primers, 439 primer combinations, 4 blocking oligonucleotides, and top primer pairs holding all relevant information including primer's characteristics and performance to facilitate primer pair selection.
Keyphrases
  • genome wide
  • healthcare
  • gene expression
  • dna methylation
  • quality improvement
  • big data
  • amino acid
  • plant growth