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Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management.

Georgina SamahaClaire M WadeHamutal MazrierCatherine E GrueberBianca Haase
Published in: BMC genomics (2021)
The high degree of synteny among felid genomes enabled the successful application of the domestic cat reference in high-quality SNV detection. The datasets presented here provide a useful resource for future studies into population dynamics, evolutionary history and genetic and disease management of big cats. This cross-species method of variant discovery provides genomic context for identifying annotated gene regions essential to understanding adaptive and deleterious variants that can improve conservation outcomes.
Keyphrases
  • copy number
  • genome wide
  • small molecule
  • dna methylation
  • high throughput
  • big data
  • type diabetes
  • gene expression
  • loop mediated isothermal amplification
  • transcription factor
  • glycemic control