Conserved associations between G-quadruplex-forming DNA motifs and virulence gene families in malaria parasites.
Hunter L GageCatherine J MerrickPublished in: BMC genomics (2020)
G4-forming motifs are uniquely strongly associated with Plasmodium var genes, suggesting a particular role for G4s in recombination and diversification of these genes. Secondly, in the A/T-rich genomes of Plasmodium species, the choice of prediction algorithm may be particularly influential when studying G4s in these important protozoan pathogens.
Keyphrases
- plasmodium falciparum
- genome wide identification
- genome wide
- transcription factor
- antimicrobial resistance
- genome wide analysis
- escherichia coli
- bioinformatics analysis
- machine learning
- pseudomonas aeruginosa
- staphylococcus aureus
- dna methylation
- circulating tumor
- dna damage
- copy number
- dna repair
- single molecule
- cell free
- deep learning
- biofilm formation
- oxidative stress
- gene expression
- nucleic acid
- circulating tumor cells