A SR-NET 3D-TO-2D ARCHITECTURE FOR PARASEPTAL EMPHYSEMA SEGMENTATION.
David Bermejo-PeláezY OkajimaG R WashkoMaría J Ledesma-CarbayoR San José EstéparPublished in: Proceedings. IEEE International Symposium on Biomedical Imaging (2019)
Paraseptal emphysema (PSE) is a relatively unexplored emphysema subtype that is usually asymptomatic, but recently associated with interstitial lung abnormalities which are related with clinical outcomes, including mortality. Previous local-based methods for emphysema subtype quantification do not properly characterize PSE. This is in part for their inability to properly capture the global aspect of the disease, as some the PSE lesions can involved large regions along the chest wall. It is our assumption, that path-based approaches are not well-suited to identify this subtype and segmentation is a better paradigm. In this work we propose and introduce the Slice-Recovery network (SR-Net) that leverages 3D contextual information for 2D segmentation of PSE lesions in CT images. For that purpose, a novel convolutional network architecture is presented, which follows an encoding-decoding path that processes a 3D volume to generate a 2D segmentation map. The dataset used for training and testing the method comprised 664 images, coming from 111 CT scans. The results demonstrate the benefit of the proposed approach which incorporate 3D context information to the network and the ability of the proposed method to identify and segment PSE lesions with different sizes even in the presence of other emphysema subtypes in an advanced stage.
Keyphrases
- convolutional neural network
- deep learning
- chronic obstructive pulmonary disease
- lung function
- pulmonary fibrosis
- computed tomography
- idiopathic pulmonary fibrosis
- dual energy
- image quality
- contrast enhanced
- machine learning
- positron emission tomography
- cystic fibrosis
- magnetic resonance imaging
- cardiovascular events
- health information
- optical coherence tomography
- cardiovascular disease
- coronary artery disease