Oral squamous cell carcinoma diagnosed from saliva metabolic profiling.
Xiaowei SongXihu YangRahul NarayananVishnu ShankarSathiyaraj EthirajXiang WangNing DuanYan-Hong NiQingang HuRichard N ZarePublished in: Proceedings of the National Academy of Sciences of the United States of America (2020)
Saliva is a noninvasive biofluid that can contain metabolite signatures of oral squamous cell carcinoma (OSCC). Conductive polymer spray ionization mass spectrometry (CPSI-MS) is employed to record a wide range of metabolite species within a few seconds, making this technique appealing as a point-of-care method for the early detection of OSCC. Saliva samples from 373 volunteers, 124 who are healthy, 124 who have premalignant lesions, and 125 who are OSCC patients, were collected for discovering and validating dysregulated metabolites and determining altered metabolic pathways. Metabolite markers were reconfirmed at the primary tissue level by desorption electrospray ionization MS imaging (DESI-MSI), demonstrating the reliability of diagnoses based on saliva metabolomics. With the aid of machine learning (ML), OSCC and premalignant lesions can be distinguished from the normal physical condition in real time with an accuracy of 86.7%, on a person by person basis. These results suggest that the combination of CPSI-MS and ML is a feasible tool for accurate, automated diagnosis of OSCC in clinical practice.
Keyphrases
- mass spectrometry
- high resolution
- machine learning
- ms ms
- gas chromatography
- liquid chromatography
- clinical practice
- multiple sclerosis
- end stage renal disease
- high performance liquid chromatography
- capillary electrophoresis
- ejection fraction
- newly diagnosed
- chronic kidney disease
- deep learning
- mental health
- physical activity
- tandem mass spectrometry
- prognostic factors
- dna methylation
- peritoneal dialysis
- single cell
- gene expression
- genome wide
- high throughput
- big data
- reduced graphene oxide