InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.
Taj MohammadYash MathurM D Imtaiyaz HassanPublished in: Briefings in bioinformatics (2021)
Exploring protein-ligand interactions is a subject of immense interest, as it provides deeper insights into molecular recognition, mechanism of interaction and subsequent functions. Predicting an accurate model for a protein-ligand interaction is a challenging task. Molecular docking is a computational method used for predicting the preferred orientation, binding conformations and the binding affinity of a ligand to a macromolecular target, especially protein. It has been applied in 'virtual high-throughput screening' of chemical libraries containing millions of compounds to find potential leads in drug design and discovery. Here, we have developed InstaDock, a free and open access Graphical User Interface (GUI) program that performs molecular docking and high-throughput virtual screening efficiently. InstaDock is a single-click GUI that uses QuickVina-W, a modified version of AutoDock Vina for docking calculations, made especially for the convenience of non-bioinformaticians and for people who are not experts in using computers. InstaDock facilitates onboard analysis of docking and visual results in just a single click. To sum up, InstaDock is the easiest and more interactive interface than ever existing GUIs for molecular docking and high-throughput virtual screening. InstaDock is freely available for academic and industrial research purposes via https://hassanlab.org/instadock.
Keyphrases
- molecular docking
- molecular dynamics simulations
- high throughput
- protein protein
- small molecule
- molecular dynamics
- binding protein
- single cell
- amino acid
- high resolution
- emergency department
- dna binding
- heavy metals
- wastewater treatment
- risk assessment
- climate change
- single molecule
- transcription factor
- human health
- capillary electrophoresis