Pharmacology-Based Prediction of the Targets and Mechanisms for Icariin against Myocardial Infarction.
Zun-Ping KeYuling WangGuzailinur SilimuZhangsheng WangAimei GaoPublished in: Medicina (Kaunas, Lithuania) (2023)
Background and Objectives: This study aims to illustrate the mechanisms underlying the therapeutic effect of Icariin after myocardial infarction (MI). Materials and Methods: Based on the network pharmacology strategy, we predict the therapeutic targets of Icariin against MI and investigate the pharmacological molecular mechanisms. A topological network was created. Biological process and Kyoto Encyclopedia of Genes and Genomes pathway enrichment were also performed. We also conducted the molecular docking analysis to stimulate the component-target interaction further and validate the direct bind effect. Results: Network pharmacology analysis identified 61 candidate genes related to the therapeutic effect of Icariin against MI. EGFR , AKT1 , TP53 , JUN , ESR1 , PTGS2 , TNF , RELA , HSP90AA1 , and BCL2L1 were identified as hub genes. The biological processes of the candidate targets were significantly involved in the reactive oxygen species metabolic process, response to hypoxia, response to decreased oxygen levels, response to oxidative stress, regulation of reactive oxygen species metabolic process, and so forth. Overall, biological process enrichment analysis indicated that the protective effect of Icariin against MI might be associated with oxidative stress. Moreover, the pathway analysis showed that the candidate targets were closely associated with lipid and atherosclerosis, AGE-RAGE signaling pathway in diabetic complications, HIF-1 signaling pathway, etc. We identified the conformation with the lowest affinity score as the docking conformation. The simulated molecular docking was displayed to illustrate the topical details of the binding sites between Icariin and TNF protein. Conclusions: This study provides an overview of the mechanisms underlying the protective effect of Icariin against MI.
Keyphrases
- molecular docking
- signaling pathway
- oxidative stress
- molecular dynamics simulations
- reactive oxygen species
- small cell lung cancer
- rheumatoid arthritis
- cardiovascular disease
- epithelial mesenchymal transition
- induced apoptosis
- transcription factor
- gene expression
- dna methylation
- cell proliferation
- heat shock protein
- wound healing
- amino acid
- capillary electrophoresis