SpotitPy: a semi-automated tool for object-based co-localization of fluorescent labels in microscopy images.

Alexia Akalestou-ClocherVivian KalamaraPantelis TopalisGeorge A Garinis

Published in: BMC bioinformatics (2022)

Overall, we present a novel and user-friendly tool that performs a semi-automated image analysis for 2D object-based co-localization. SpotitPy can provide reproducible and robust quantifications for large datasets within a limited timeframe. The software is open-source and can be found in the GitHub project repository: ( https://github.com/alexiaales/SpotitPy ).

Keyphrases

deep learning
high throughput
working memory
machine learning
optical coherence tomography
convolutional neural network
label free
high resolution
single molecule
quality improvement
quantum dots
living cells
high speed
rna seq
data analysis
low cost