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The Identification and Expression Analysis of the Liriodendron chinense F-Box Gene Family.

Shichan HeLin XuWeihuang WuJiaji ZhangZhaodong HaoLu LuJisen ShiJinhui Chen
Published in: Plants (Basel, Switzerland) (2024)
The F-box gene family is one of the largest gene families in plants, and it plays a crucial role in regulating plant development, reproduction, cellular protein degradation, and response to biotic and abiotic stresses. Despite their significance, a comprehensive analysis of the F-box gene family in Liriodendron chinense and other magnoliaceae species has not been reported. In this study, we report for the first time the identification of 144 full-length F-box genes in L. chinense . Based on specific domains and phylogenetic analyses, these genes were divided into 10 distinct subfamilies. We further analyzed their gene structure, conserved domain and chromosome distribution, genome-wide replication events, and collinearity. Additionally, based on GO analysis, we found that F-box genes exhibit functional specificity, with a significant proportion of them being involved in protein binding (GO:0005515), suggesting that F-box genes may play an important role in gene regulation in L. chinense . Transcriptome data and q-PCR results also showed that F-box genes are involved in the development of multiple tissues in L. chinense , regulate the somatic embryogenesis of Liriodendron hybrids, and play a pivotal role in abiotic stress. Altogether, these findings provide a foundation for understanding the biological function of F-box genes in L. chinense and other plant species.
Keyphrases
  • genome wide identification
  • transcription factor
  • genome wide
  • binding protein
  • bioinformatics analysis
  • dna binding
  • copy number
  • dna methylation
  • gene expression
  • deep learning
  • protein protein