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CheRRI-Accurate classification of the biological relevance of putative RNA-RNA interaction sites.

Teresa MüllerStefan MautnerPavankumar VidemFlorian EggenhoferMartin RadenRolf Backofen
Published in: GigaScience (2024)
CheRRI is a stand-alone postprocessing tool to filter either predicted or experimentally identified potential RNA-RNA interactions on a genomic level to enhance the quality of interaction candidates. It is easy to install (via conda, pip packages), use (via Galaxy), and integrate into existing RNA-RNA interaction pipelines.
Keyphrases
  • machine learning
  • gene expression
  • deep learning
  • mass spectrometry