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fcScan: a versatile tool to cluster combinations of sites using genomic coordinates.

Abdullah El-KurdiGhiwa Ali KhalilGeorges KhazenPierre Khoueiry
Published in: BMC bioinformatics (2020)
fcScan is ideal for detecting cis-regulatory modules of transcription factor binding sites with a specific grammar as well as genomic loci enriched for mutations. The flexibility in input parameters allows users to perform searches targeting specific research questions. It is released under Artistic-2.0 License. The source code is freely available through Bioconductor (https://bioconductor.org/packages/fcScan) and GitHub (https://github.com/pkhoueiry/fcScan).
Keyphrases
  • transcription factor
  • copy number
  • genome wide
  • cancer therapy
  • drug delivery
  • dna methylation
  • genome wide association