fcScan: a versatile tool to cluster combinations of sites using genomic coordinates.
Abdullah El-KurdiGhiwa Ali KhalilGeorges KhazenPierre KhoueiryPublished in: BMC bioinformatics (2020)
fcScan is ideal for detecting cis-regulatory modules of transcription factor binding sites with a specific grammar as well as genomic loci enriched for mutations. The flexibility in input parameters allows users to perform searches targeting specific research questions. It is released under Artistic-2.0 License. The source code is freely available through Bioconductor (https://bioconductor.org/packages/fcScan) and GitHub (https://github.com/pkhoueiry/fcScan).