The Digital Brain Bank, an open access platform for post-mortem imaging datasets.
Benjamin C TendlerTaylor HanayikOlaf AnsorgeSarah Bangerter-ChristensenGregory S BernsMads F BertelsenKatherine L BryantSean FoxleyMartijn P van den HeuvelAmy F D HowardIstvan N HuszarAlexandre A KhrapitchevAnna LeontePaul R MangerRicarda A L MenkeJeroen MollinkDuncan MortimerMenuka Pallebage-GamarallageLea RoumazeillesJerome SalletLianne H ScholtensConnor ScottAdele SmartMartin R TurnerChaoyue WangSaad JbabdiRogier B MarsKarla L MillerPublished in: eLife (2022)
Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain Bank (open.win.ox.ac.uk/DigitalBrainBank), a data release platform providing open access to curated, multimodal post-mortem neuroimaging datasets. Datasets span three themes -Digital Neuroanatomist : datasets for detailed neuroanatomical investigations; Digital Brain Zoo : datasets for comparative neuroanatomy; and Digital Pathologist : datasets for neuropathology investigations. The first Digital Brain Bank data release includes 21 distinctive whole-brain diffusion MRI datasets for structural connectivity investigations, alongside microscopy and complementary MRI modalities. This includes one of the highest-resolution whole-brain human diffusion MRI datasets ever acquired, whole-brain diffusion MRI in fourteen nonhuman primate species, and one of the largest post-mortem whole-brain cohort imaging studies in neurodegeneration. The Digital Brain Bank is the culmination of our lab's investment into post-mortem MRI methodology and MRI-microscopy analysis techniques. This manuscript provides a detailed overview of our work with post-mortem imaging to date, including the development of diffusion MRI methods to image large post-mortem samples, including whole, human brains. Taken together, the Digital Brain Bank provides cross-scale, cross-species datasets facilitating the incorporation of post-mortem data into neuroimaging studies.
Keyphrases
- magnetic resonance imaging
- resting state
- high resolution
- white matter
- contrast enhanced
- functional connectivity
- rna seq
- diffusion weighted imaging
- cerebral ischemia
- endothelial cells
- high throughput
- computed tomography
- magnetic resonance
- multiple sclerosis
- deep learning
- machine learning
- brain injury
- photodynamic therapy
- pain management
- single cell
- blood brain barrier
- fluorescence imaging