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A stochastic vs deterministic perspective on the timing of cellular events.

Lucy HamMegan A CoomerKaan ÖcalRamon GrimaMichael P H Stumpf
Published in: Nature communications (2024)
Cells are the fundamental units of life, and like all life forms, they change over time. Changes in cell state are driven by molecular processes; of these many are initiated when molecule numbers reach and exceed specific thresholds, a characteristic that can be described as "digital cellular logic". Here we show how molecular and cellular noise profoundly influence the time to cross a critical threshold-the first-passage time-and map out scenarios in which stochastic dynamics result in shorter or longer average first-passage times compared to noise-less dynamics. We illustrate the dependence of the mean first-passage time on noise for a set of exemplar models of gene expression, auto-regulatory feedback control, and enzyme-mediated catalysis. Our theory provides intuitive insight into the origin of these effects and underscores two important insights: (i) deterministic predictions for cellular event timing can be highly inaccurate when molecule numbers are within the range known for many cells; (ii) molecular noise can significantly shift mean first-passage times, particularly within auto-regulatory genetic feedback circuits.
Keyphrases
  • induced apoptosis
  • gene expression
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  • cell cycle arrest
  • climate change
  • dna methylation
  • stem cells
  • single molecule
  • single cell
  • pi k akt
  • copy number