A plasma protein classifier for predicting amyloid burden for preclinical Alzheimer's disease.
Nicholas J AshtonAlejo J Nevado-HolgadoImelda S BarberSteven LynhamVeer GuptaPratishtha ChatterjeeKathryn GoozeeEugene HoneSteve PedriniKaj BlennowMichael SchöllHenrik ZetterbergKathryn A EllisAshley I BushChristopher C RoweVictor L VillemagneDavid AmesColin L MastersDag AarslandJohn PowellSimon LovestoneRalph N MartinsAbdul HyePublished in: Science advances (2019)
A blood-based assessment of preclinical disease would have huge potential in the enrichment of participants for Alzheimer's disease (AD) therapeutic trials. In this study, cognitively unimpaired individuals from the AIBL and KARVIAH cohorts were defined as Aβ negative or Aβ positive by positron emission tomography. Nontargeted proteomic analysis that incorporated peptide fractionation and high-resolution mass spectrometry quantified relative protein abundances in plasma samples from all participants. A protein classifier model was trained to predict Aβ-positive participants using feature selection and machine learning in AIBL and independently assessed in KARVIAH. A 12-feature model for predicting Aβ-positive participants was established and demonstrated high accuracy (testing area under the receiver operator characteristic curve = 0.891, sensitivity = 0.78, and specificity = 0.77). This extensive plasma proteomic study has unbiasedly highlighted putative and novel candidates for AD pathology that should be further validated with automated methodologies.
Keyphrases
- machine learning
- positron emission tomography
- high resolution mass spectrometry
- computed tomography
- deep learning
- cognitive decline
- protein protein
- amino acid
- liquid chromatography
- cell therapy
- binding protein
- mesenchymal stem cells
- high throughput
- high resolution
- resistance training
- pet imaging
- bone marrow
- small molecule
- body composition
- ms ms
- high intensity