Shared Gene Targets of the ATF4 and p53 Transcriptional Networks.
Gabriele BaniulyteSerene A DurhamLauren E MerchantMorgan A SammonsPublished in: Molecular and cellular biology (2023)
The master tumor suppressor p53 regulates multiple cell fate decisions, such as cell cycle arrest and apoptosis, via transcriptional control of a broad gene network. Dysfunction in the p53 network is common in cancer, often through mutations that inactivate p53 or other members of the pathway. Induction of tumor-specific cell death by restoration of p53 activity without off-target effects has gained significant interest in the field. In this study, we explore the gene regulatory mechanisms underlying a putative anticancer strategy involving stimulation of the p53-independent integrated stress response (ISR). Our data demonstrate the p53 and ISR pathways converge to independently regulate common metabolic and proapoptotic genes. We investigated the architecture of multiple gene regulatory elements bound by p53 and the ISR effector ATF4 controlling this shared regulation. We identified additional key transcription factors that control basal and stress-induced regulation of these shared p53 and ATF4 target genes. Thus, our results provide significant new molecular and genetic insight into gene regulatory networks and transcription factors that are the target of numerous antitumor therapies.
Keyphrases
- transcription factor
- genome wide identification
- cell cycle arrest
- cell death
- stress induced
- genome wide
- pi k akt
- dna binding
- cell fate
- oxidative stress
- copy number
- endoplasmic reticulum stress
- papillary thyroid
- dna methylation
- signaling pathway
- gene expression
- dendritic cells
- squamous cell
- regulatory t cells
- genome wide analysis
- immune response
- atomic force microscopy
- bioinformatics analysis
- lymph node metastasis
- type iii
- machine learning
- network analysis