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A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data.

Michael SekulaJeremy GaskinsSusmita Datta
Published in: BMC bioinformatics (2020)
Simulation studies demonstrate that our methodology has high power in identifying gene-gene associations while maintaining a nominal false discovery rate. In real data analyses, our model identifies more known and predicted protein-protein interactions than other competing network models.
Keyphrases
  • single cell
  • genome wide
  • copy number
  • electronic health record
  • genome wide identification
  • high throughput
  • small molecule
  • big data
  • machine learning
  • gene expression
  • data analysis