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Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators.

Richard M JiangFredrik WredePrashant SinghAndreas HellanderLinda R Petzold
Published in: BMC bioinformatics (2021)
We provide a novel algorithm for accelerating the construction of summary statistics for stochastic biochemical systems. Compared to the standard practice of exclusively training from exact simulator samples, our method is able to dramatically reduce the number of required calls to the stochastic simulator at a minimal loss in accuracy. This can immediately be implemented to increase the overall speed of the ABC workflow for estimating parameters in complex systems.
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