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Trumpet is an operating system for simple and robust cell-free biocomputing.

Judee A SharonChelsea DasrathAiden FujiwaraAlessandro SnyderMace BlankSam O'BrienLauren M AufdembrinkAaron E EngelhartKatarzyna P Adamala
Published in: Nature communications (2023)
Biological computation is becoming a viable and fast-growing alternative to traditional electronic computing. Here we present a biocomputing technology called Trumpet: Transcriptional RNA Universal Multi-Purpose GatE PlaTform. Trumpet combines the simplicity and robustness of the simplest in vitro biocomputing methods, adding signal amplification and programmability, while avoiding common shortcomings of live cell-based biocomputing solutions. We have demonstrated the use of Trumpet to build all universal Boolean logic gates. We have also built a web-based platform for designing Trumpet gates and created a primitive processor by networking several gates as a proof-of-principle for future development. The Trumpet offers a change of paradigm in biocomputing, providing an efficient and easily programmable biological logic gate operating system.
Keyphrases
  • cell free
  • high throughput
  • nucleic acid
  • transcription factor
  • current status
  • oxidative stress
  • single cell