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The π-Tetrel Bond and its Influence on Hydrogen Bonding and Proton Transfer.

Yuanxin WeiQing-Zhong LiSteve Scheiner
Published in: Chemphyschem : a European journal of chemical physics and physical chemistry (2018)
The positive region that lies above the plane of F2 TO (T=C and Si) interacts with malondialdehyde (MDA), which contains an intramolecular H-bond. The T atom of F2 TO can lie either in the MDA molecular plane, forming a T⋅⋅⋅O tetrel bond, or F2 TO can stack directly above MDA in a parallel arrangement. The former structure is more stable than the latter, and in either case, F2 SiO engages in a much stronger interaction than does F2 CO, reaching nearly 200 kJ mol-1 . The π-tetrel bond strengthens/weakens the MDA H-bond when the bond is formed to the hydroxyl/carbonyl group of MDA, and causes an accompanying inhibition/promotion of proton transfer within this H-bond; this effect is stronger for F2 SiO. These same aspects can be tuned by substituents placed on any of the C atoms of MDA, although their effects are not fully correlated with the electron-withdrawing or electron-releasing properties of the substituent. A new type of π-π tetrel bond occurs when the π-hole on the T atom of F2 TO approaches the middle carbon atom of MDA from above, and a similar configuration is also found between F2 TO and benzene. Evidence for extensive C⋅⋅⋅C π-π tetrel bonding in crystal materials is presented.
Keyphrases
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  • transition metal
  • molecular dynamics
  • signaling pathway