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Structural insights into β-1,3-glucan cleavage by a glycoside hydrolase family.

Camila R SantosPedro A C R CostaPlinio S VieiraSinkler E T GonzalezThamy L R CorreaEvandro A LimaFernanda MandelliRenan Augusto Siqueira PirollaMariane N DominguesLucelia CabralMarcele P MartinsRosa L CordeiroAtílio T JuniorBeatriz P SouzaÉrica T PratesFabio C GozzoGabriela Felix PersinotiMunir S SkafMário Tyago Murakami
Published in: Nature chemical biology (2020)
The fundamental and assorted roles of β-1,3-glucans in nature are underpinned on diverse chemistry and molecular structures, demanding sophisticated and intricate enzymatic systems for their processing. In this work, the selectivity and modes of action of a glycoside hydrolase family active on β-1,3-glucans were systematically investigated combining sequence similarity network, phylogeny, X-ray crystallography, enzyme kinetics, mutagenesis and molecular dynamics. This family exhibits a minimalist and versatile (α/β)-barrel scaffold, which can harbor distinguishing exo or endo modes of action, including an ancillary-binding site for the anchoring of triple-helical β-1,3-glucans. The substrate binding occurs via a hydrophobic knuckle complementary to the canonical curved conformation of β-1,3-glucans or through a substrate conformational change imposed by the active-site topology of some fungal enzymes. Together, these findings expand our understanding of the enzymatic arsenal of bacteria and fungi for the breakdown and modification of β-1,3-glucans, which can be exploited for biotechnological applications.
Keyphrases
  • molecular dynamics
  • density functional theory
  • high resolution
  • molecular dynamics simulations
  • amino acid
  • dna binding
  • single molecule
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  • computed tomography
  • drug discovery