TopoFilter: a MATLAB package for mechanistic model identification in systems biology.
Mikołaj RybińskiSimon MöllerMikael SunnåkerClaude LormeauJoerg StellingPublished in: BMC bioinformatics (2020)
TopoFilter is a flexible software framework that makes Bayesian model selection and reduction efficient and scalable to network models of a complexity that represents contemporary problems in, for example, cell signaling. TopoFilter is open-source, available under the GPL-3.0 license at https://gitlab.com/csb.ethz/TopoFilter. It includes installation instructions, a quickstart guide, a description of all package options, and multiple examples.