Login / Signup

The whole genome of Colletes collaris (Hymenoptera: Colletidae): an important step in comparative genomics of cellophane bees.

Rafael Rodrigues FerrariThiago Mafra BatistaQing-Song ZhouHeron O HilárioMichael C OrrArong LuoChao-Dong Zhu
Published in: Genome biology and evolution (2023)
Gaining knowledge on bees is of the utmost importance due to the paramount role that they play in angiosperm pollination. Herein, we provide the first genome assembly of Colletes collaris, a pan-Eurasian cellophane bee. We sequenced 50.53 Gbp of long-read data plus 57.36 Gbp of short-read data in Oxford Nanopore Technologies and Illumina platforms, respectively. The genome assembly consisted of 374.75 Mbp distributed across 374 contigs, with L50 and N50 of nine and 8.96 Mbp, respectively. We predicted the genome to comprise 20,399 protein-coding genes, 467,947 repeats and 4,315 non-coding RNA genes. The transcriptome and mitochondrial genome of the species were also assembled. Gene family analysis with 15 insect species identified 14,417 families, 9,517 of them found in C. collaris. A dated phylogenomic analysis revealed high numbers of orthogroups experiencing rapid evolution within Colletes.
Keyphrases
  • genome wide
  • single cell
  • single molecule
  • dna methylation
  • healthcare
  • gene expression
  • big data
  • oxidative stress
  • rna seq
  • machine learning
  • deep learning
  • bioinformatics analysis
  • protein protein
  • sensitive detection