Histopathology and proteomics are synergistic for High-Grade Serous Ovarian Cancer platinum response prediction.
Oz KilimAlex OlarAndrás BiriczLilla MadarasPéter PollnerZoltán SzállásiZsofia SztupinszkiIstvan CsabaiPublished in: medRxiv : the preprint server for health sciences (2024)
Patients with High-Grade Serous Ovarian Cancer (HGSOC) exhibit varied responses to treatment, with 20-30% showing de novo resistance to platinum-based chemotherapy. While hematoxylin-eosin (H&E) pathological slides are used for routine diagnosis of cancer type, they may also contain diagnostically useful information about treatment response. Our study demonstrates that combining H&E-stained Whole Slide Images (WSIs) with proteomic signatures using a multimodal deep learning framework significantly improves the prediction of platinum response in both discovery and validation cohorts. This method outperforms the Homologous Recombination Deficiency (HRD) score in predicting platinum response and overall patient survival. The study sets new performance benchmarks and explores the intersection of histology and proteomics, highlighting phenotypes related to treatment response pathways, including homologous recombination, DNA damage response, nucleotide synthesis, apoptosis, and ER stress. This integrative approach has the potential to improve personalized treatment and provide insights into the therapeutic vulnerabilities of HGSOC.
Keyphrases
- high grade
- dna repair
- low grade
- deep learning
- dna damage response
- dna damage
- mass spectrometry
- oxidative stress
- label free
- convolutional neural network
- small molecule
- healthcare
- cell death
- gene expression
- case report
- combination therapy
- papillary thyroid
- replacement therapy
- signaling pathway
- high throughput
- squamous cell carcinoma
- cell proliferation
- genome wide
- clinical practice
- pain management
- network analysis
- lymph node metastasis
- smoking cessation