Expanding the Galaxy's reference data.
Nagampalli VijayKrishnaJayadev JoshiNate CoraorJennifer Hillman-JacksonDave BouvierMarius van den BeekIgnacio EguinoaFrederik CoppensJohn DavisMichał StolarczykNathan C SheffieldSimon GladmanGianmauro CuccuruBjoern Andreas GrueningNicola SoranzoHelena RascheBradley W LanghorstMatthias BerntDan FornikaDavid Anderson de Lima MoraisMichel BarrettePeter van HeusdenMauro PetrilloAntonio Puertas GallardoAlex PatakHans-Rudolf HotzDaniel BlankenbergPublished in: Bioinformatics advances (2022)
The ability of Galaxy to use refgenie assets was added to the core Galaxy framework in version 22.01, which is available from https://github.com/galaxyproject/galaxy under the Academic Free License version 3.0. The refgenie Data Manager tool can be installed via the Galaxy ToolShed, with source code managed at https://github.com/BlankenbergLab/galaxy-tools-blankenberg/tree/main/data_managers/data_manager_refgenie_pull and released using an MIT license. Access to existing data is also available through CVMFS, with instructions at https://galaxyproject.org/admin/reference-data-repo/. No new data were generated or analyzed in support of this research.