Identification of Distinct, Quantitative Pattern Classes from Emergent Tissue-Scale hiPSC Bioelectric Properties.
Dennis Andre NorfleetAnja J MelendezCaroline AltingSiya KannanArina A NikitinaRaquel Caldeira BotelhoBo YangMelissa L KempPublished in: Cells (2024)
Bioelectric signals possess the ability to robustly control and manipulate patterning during embryogenesis and tissue-level regeneration. Endogenous local and global electric fields function as a spatial 'pre-pattern', controlling cell fates and tissue-scale anatomical boundaries; however, the mechanisms facilitating these robust multiscale outcomes are poorly characterized. Computational modeling addresses the need to predict in vitro patterning behavior and further elucidate the roles of cellular bioelectric signaling components in patterning outcomes. Here, we modified a previously designed image pattern recognition algorithm to distinguish unique spatial features of simulated non-excitable bioelectric patterns under distinct cell culture conditions. This algorithm was applied to comparisons between simulated patterns and experimental microscopy images of membrane potential (V mem ) across cultured human iPSC colonies. Furthermore, we extended the prediction to a novel co-culture condition in which cell sub-populations possessing different ionic fluxes were simulated; the defining spatial features were recapitulated in vitro with genetically modified colonies. These results collectively inform strategies for modeling multiscale spatial characteristics that emerge in multicellular systems, characterizing the molecular contributions to heterogeneity of membrane potential in non-excitable cells, and enabling downstream engineered bioelectrical tissue design.
Keyphrases
- deep learning
- single cell
- endothelial cells
- machine learning
- stem cells
- high resolution
- induced apoptosis
- single molecule
- body composition
- high throughput
- induced pluripotent stem cells
- convolutional neural network
- mesenchymal stem cells
- magnetic resonance imaging
- cell death
- skeletal muscle
- metabolic syndrome
- transcription factor
- magnetic resonance
- cell fate
- adipose tissue
- endoplasmic reticulum stress
- cell cycle arrest
- weight loss