Statistical Classification for Raman Spectra of Tumoral Genomic DNA.
Claudio DurastantiEmilio Nicola Maria CirilloIlaria De BenedictisMario LeddaAntonio SciortinoAntonella LisiAnnalisa ConvertinoValentina MussiPublished in: Micromachines (2022)
We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the ℓ2 distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen's κ statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing.
Keyphrases
- circulating tumor
- single molecule
- cell free
- highly efficient
- gold nanoparticles
- copy number
- density functional theory
- nucleic acid
- raman spectroscopy
- deep learning
- magnetic resonance imaging
- high resolution
- cell cycle arrest
- label free
- dna methylation
- gene expression
- room temperature
- signaling pathway
- big data
- oxidative stress
- reduced graphene oxide
- squamous cell
- cancer therapy
- quantum dots