Functional in vitro diversity of an intrinsically disordered plant protein during freeze-thawing is encoded by its structural plasticity.
Itzell Hernández-SánchezTobias RindfleischJessica AlpersMartin DulleChristopher J GarveyPatrick Knox-BrownMarkus S MiettinenGergely NagyJulio M PusterlaAgata RekasKeyun ShouAndreas Maximilian StadlerDirk WaltherMartin WolffEllen ZutherAnja ThalhammerPublished in: Protein science : a publication of the Protein Society (2024)
Intrinsically disordered late embryogenesis abundant (LEA) proteins play a central role in the tolerance of plants and other organisms to dehydration brought upon, for example, by freezing temperatures, high salt concentration, drought or desiccation, and many LEA proteins have been found to stabilize dehydration-sensitive cellular structures. Their conformational ensembles are highly sensitive to the environment, allowing them to undergo conformational changes and adopt ordered secondary and quaternary structures and to participate in formation of membraneless organelles. In an interdisciplinary approach, we discovered how the functional diversity of the Arabidopsis thaliana LEA protein COR15A found in vitro is encoded in its structural repertoire, with the stabilization of membranes being achieved at the level of secondary structure and the stabilization of enzymes accomplished by the formation of oligomeric complexes. We provide molecular details on intra- and inter-monomeric helix-helix interactions, demonstrate how oligomerization is driven by an α-helical molecular recognition feature (α-MoRF) and provide a rationale that the formation of noncanonical, loosely packed, right-handed coiled-coils might be a recurring theme for homo- and hetero-oligomerization of LEA proteins.
Keyphrases
- arabidopsis thaliana
- single molecule
- molecular dynamics
- molecular dynamics simulations
- high resolution
- protein protein
- dna binding
- amino acid
- clinical trial
- machine learning
- binding protein
- climate change
- deep learning
- gram negative
- multidrug resistant
- transcription factor
- genome wide identification
- high throughput sequencing