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ClineHelpR: an R package for genomic cline outlier detection and visualization.

Bradley T MartinTyler K ChafinMarlis R DouglasMichael E Douglas
Published in: BMC bioinformatics (2021)
Our package increases the reproducibility and accessibility of genomic cline methods, thus allowing an expanded user base and promoting these methods as mechanisms to address diverse evolutionary questions in both model and non-model organisms. Furthermore, the ClineHelpR extended functionality can evaluate genomic clines in the context of spatial and environmental features, allowing users to explore underlying processes potentially contributing to the observed patterns and helping facilitate effective conservation management strategies.
Keyphrases
  • copy number
  • genome wide
  • gram negative
  • gene expression
  • real time pcr
  • multidrug resistant
  • life cycle