RNA Sequencing of Whole Blood in Premature Coronary Artery Disease: Identification of Novel Biomarkers and Involvement of T Cell Imbalance.
Si ChenZhan LiHaolong LiXiaoli ZengHui YuanYongzhe LiPublished in: Journal of cardiovascular translational research (2023)
Serum biomarkers were explored based on the peripheral blood gene expression profiles of premature coronary artery disease (PCAD). RNA sequencing (RNA-Seq) was used to detect PCAD-specific differentially expressed genes (DEGs). Quantitative real-time polymerase chain reaction (RT-PCR) was used to validate the most significant DEGs, and enzyme-linked immunosorbent assay (ELISA) was utilized to quantify the effect on corresponding serum proteins. Fifty-nine PCAD-specific DEGs were identified. Functional analysis showed positive regulation of T cell-mediated cytotoxicity, regulation of T cell-mediated immunity, and the regulation of alpha-beta T cell proliferation which were enriched in PCAD. RT-PCR validated the significant difference in the expression of BAG6, MUC5B, and APOA2 between PCAD and late-onset coronary artery disease (LCAD) patients. ELISA validation showed serum MUC5B increased dramatically in PCAD when compared to LCAD. Our study found T cells contribute to the occurrence of PCAD, and the inflammatory factor MUC5B may be a novel serum marker in PCAD patients.
Keyphrases
- coronary artery disease
- single cell
- rna seq
- late onset
- end stage renal disease
- cell proliferation
- ejection fraction
- newly diagnosed
- chronic kidney disease
- peripheral blood
- percutaneous coronary intervention
- prognostic factors
- risk assessment
- peritoneal dialysis
- genome wide
- oxidative stress
- heart failure
- type diabetes
- atrial fibrillation
- aortic stenosis
- patient reported outcomes
- mass spectrometry
- cell cycle
- patient reported
- transcription factor
- bioinformatics analysis