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Hydrogen-Bonded Network of Water in Phase-Separated Biomolecular Condensates.

Ashish JoshiAnamika AvniAnuja WalimbeSandeep K RaiSnehasis SarkarSamrat Mukhopadhyay
Published in: The journal of physical chemistry letters (2024)
Biomolecular condensates formed via phase separation of intrinsically disordered proteins/regions (IDPs/IDRs) and nucleic acids are associated with cell physiology and disease. Water makes up for ∼60-70% of the condensate volume and is thought to influence the complex interplay of chain-chain and chain-solvent interactions, modulating the mesoscale properties of condensates. The behavior of water in condensates and the key roles of protein hydration water in driving the phase separation remain elusive. Here, we employ single-droplet vibrational Raman spectroscopy to illuminate the structural redistribution within protein hydration water during the phase separation of neuronal IDPs. Our Raman measurements reveal the changes in the water hydrogen bonding network during homotypic and heterotypic phase separation governed by various molecular drivers. Such single-droplet water Raman measurements offer a potent generic tool to unmask the intriguing interplay of sequence-encoded chain-chain and chain-solvent interactions governing macromolecular phase separation into membraneless organelles, synthetic condensates, and protocells.
Keyphrases
  • raman spectroscopy
  • single cell
  • high throughput
  • gene expression
  • dna methylation
  • ionic liquid
  • amino acid
  • binding protein
  • cell therapy
  • subarachnoid hemorrhage
  • anti inflammatory