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Mimicking Microbial Rhodopsin Isomerization in a Single Crystal.

Alireza GhanbarpourMuath NairatMeisam NosratiElizabeth M SantosChrysoula VasileiouMarcos DantusBabak BorhanJames H Geiger
Published in: Journal of the American Chemical Society (2019)
Bacteriorhodopsin represents the simplest, and possibly most abundant, phototropic system requiring only a retinal-bound transmembrane protein to convert photons of light to an energy-generating proton gradient. The creation and interrogation of a microbial rhodopsin mimic, based on an orthogonal protein system, would illuminate the design elements required to generate new photoactive proteins with novel function. We describe a microbial rhodopsin mimic, created using a small soluble protein as a template, that specifically photoisomerizes all- trans to 13- cis retinal followed by thermal relaxation to the all- trans isomer, mimicking the bacteriorhodopsin photocycle, in a single crystal. The key element for selective isomerization is a tuned steric interaction between the chromophore and protein, similar to that seen in the microbial rhodopsins. It is further demonstrated that a single mutation converts the system to a protein photoswitch without chromophore photoisomerization or conformational change.
Keyphrases
  • microbial community
  • protein protein
  • small molecule
  • binding protein
  • diabetic retinopathy
  • single molecule
  • molecular dynamics simulations