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Identification of cell types in a mouse brain single-cell atlas using low sampling coverage.

Aparna BhaduriTomasz J NowakowskiAlex A PollenArnold R Kriegstein
Published in: BMC biology (2018)
Together, these findings suggest that most of the biologically interpretable cell types from the 1.3 million cell database can be recapitulated by analyzing 50,000 randomly selected cells, indicating that instead of profiling few individuals at high "cellular coverage," cell atlas studies may instead benefit from profiling more individuals, or many time points at lower cellular coverage and then further enriching for populations of interest. This strategy is ideal for scenarios where cost and time are limited, though extremely rare populations of interest (<ā€‰1%) may be identifiable only with much higher cell numbers.
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