Login / Signup

Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri .

Teresa D ShippySherry MillerBlessy TamayoPrashant S HosmaniMirella Flores-GonzalezLukas A MuellerWayne Brian HunterSusan J BrownTom D'EliaSurya Saha
Published in: GigaByte (Hong Kong, China) (2022)
Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest control methods. The Asian citrus psyllid, Diaphorina citri , carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease. We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create high-quality gene models to aid the design of interdictory molecules for pest control. We categorized the D. citri chitinases according to an established classification scheme and re-evaluated the classification of chitinases in other hemipterans. In addition to chitinases from known groups, we identified a novel class of chitinases present in D. citri and several related hemipterans that appears to be the result of horizontal gene transfer.
Keyphrases
  • genome wide identification
  • genome wide
  • genome wide analysis
  • machine learning
  • deep learning
  • bioinformatics analysis
  • dna methylation
  • copy number
  • transcription factor
  • healthcare
  • mental health