The complete mitochondrial genome of Cyphocaris challengeri (Amphipoda: Cyphocarididae).
Chloe N RabinowitzShannon D BrownSean M McAllisterAmanda K WinansJulie E KeisterMatthew P GalaskaPublished in: Mitochondrial DNA. Part B, Resources (2023)
The amphipod Cyphocaris challengeri is a globally distributed, highly abundant species of zooplankton. Here, we report the complete mitochondrial genome of C. challengeri obtained using the Illumina sequencing platform from a specimen collected from Puget Sound, Washington. The mitogenome is a circular DNA molecule with a size of 14,338 bp and 26.7% GC content, with 13 protein-encoding genes, 2 rRNAs, and 22 tRNAs annotated. A maximum likelihood phylogenetic analysis including C. challengeri and all other available mitogenomes from Amphipoda places our mitogenome firmly within the Lysianassoidea superfamily, as expected. The newly described mitochondrial genome of C. challengeri fills a gap in valuable reference data for detecting this organism using molecular methods such as environmental DNA.
Keyphrases
- genome wide
- oxidative stress
- circulating tumor
- single molecule
- cell free
- electronic health record
- dna methylation
- single cell
- big data
- genome wide identification
- machine learning
- high resolution
- transcription factor
- small molecule
- artificial intelligence
- binding protein
- human health
- liquid chromatography
- tandem mass spectrometry
- genome wide analysis