APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.

Naima Ahmed FahmiKhandakar Tanvir AhmedJae-Woong ChangHeba NassereddeenDeliang FanJeongsik YongRui Kuang

Published in: BMC bioinformatics (2022)

APA-Scan is a comprehensive computational pipeline to detect transcriptome-wide 3'-UTR APA events. The pipeline integrates both RNA-seq and 3'-end-seq data information and can efficiently identify the significant events with a high-resolution short reads coverage plots.

Keyphrases

rna seq
single cell
high resolution
computed tomography
electronic health record
big data
gene expression
magnetic resonance imaging
loop mediated isothermal amplification
deep learning
health insurance