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A high quality, high molecular weight DNA extraction method for PacBio HiFi genome sequencing of recalcitrant plants.

Kanae NishiiMichael MöllerRobert G FosterLaura L ForrestNathan KelsoSadie BarberCaroline HowardMichelle L Hart
Published in: Plant methods (2023)
DNA extraction is a critical step towards obtaining a complete genome assembly. Our DNA extraction method here provided the required high quality, high molecular weight DNA for successful standard-input PacBio HiFi library preparation. The contigs from those reads showed a high contiguity, providing a good starting draft assembly towards obtaining a complete genome. The results obtained here were highly promising, and demonstrated that the DNA extraction method developed here is compatible with PacBio HiFi sequencing and suitable for de novo whole genome sequencing projects of plants.
Keyphrases
  • circulating tumor
  • cell free
  • single molecule
  • nucleic acid
  • genome wide
  • quality improvement
  • mass spectrometry
  • molecularly imprinted
  • liquid chromatography