SEC-SAXS and HDX-MS: A powerful combination. The case of the calcium-binding domain of a bacterial toxin.
Darragh P O'BrienSébastien BrierDaniel LadantDominique DurandAlexandre ChenalPatrice VachettePublished in: Biotechnology and applied biochemistry (2017)
Small-angle X-ray scattering (SAXS) is a relatively simple experimental technique that provides information on the global conformation of macromolecules in solution, be they fully structured, partially, or extensively unfolded. Size exclusion chromatography in line with a SAXS measuring cell considerably improves the monodispersity and ideality of solutions, the two main requirements of a "good" SAXS sample. Hydrogen/deuterium exchange monitored by mass spectrometry (HDX-MS) offers a wealth of information regarding the solvent accessibility at the local (peptide) level. It constitutes a sensitive probe of local flexibility and, more generally, of structural dynamics. The combination of both approaches presented here is very powerful, as illustrated by the case of RD, a calcium-binding protein that is part of a bacterial virulence factor.
Keyphrases
- mass spectrometry
- high resolution
- binding protein
- liquid chromatography
- escherichia coli
- high performance liquid chromatography
- capillary electrophoresis
- gas chromatography
- multiple sclerosis
- health information
- staphylococcus aureus
- pseudomonas aeruginosa
- ms ms
- cell therapy
- endoplasmic reticulum stress
- biofilm formation
- tandem mass spectrometry
- molecular dynamics simulations
- quantum dots
- healthcare
- computed tomography
- high speed
- antimicrobial resistance
- stem cells
- magnetic resonance imaging
- living cells
- cystic fibrosis
- transcription factor
- social media
- simultaneous determination