INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
João Dourado SantosDaniel SobralMiguel PinheiroJoana IsidroCarlijn BogaardtMiguel PintoRodrigo EusébioAndré SantosRafael MamedeDaniel L HortonJoão Paulo Gomesnull nullVítor BorgesPublished in: Genome medicine (2024)
The accessibility, versatility, and functionality of INSaFLU-TELEVIR are expected to supply public and animal health laboratories and researchers with a user-oriented and pan-viral bioinformatics framework that promotes a strengthened and timely viral metagenomic detection and routine genomics surveillance. INSaFLU-TELEVIR is compatible with Illumina, Ion Torrent, and ONT data and is freely available at https://insaflu.insa.pt/ (online tool) and https://github.com/INSaFLU (code).
Keyphrases
- public health
- sars cov
- healthcare
- loop mediated isothermal amplification
- mental health
- clinical practice
- health information
- label free
- real time pcr
- antibiotic resistance genes
- social media
- electronic health record
- emergency department
- big data
- single cell
- copy number
- dna methylation
- gene expression
- microbial community
- machine learning
- genome wide
- high throughput sequencing