Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification.

Kristofer SandåsJacob LewerentzEdvin KarlssonLinda KarlssonDavid SundellKotryna Simonyté-SjödinAndreas Sjödin

Published in: Bioinformatics (Oxford, England) (2024)

Nanometa Live has been implemented as a local web application using the Dash framework with Snakemake handling the data processing. The source code is freely accessible on the GitHub repository at https://github.com/FOI-Bioinformatics/nanometa_live and it is easily installable using Bioconda. It includes containerization support via Docker and Singularity, ensuring ease of use, reproducibility, and portability.

Keyphrases

data analysis
electronic health record
machine learning
bioinformatics analysis
wastewater treatment