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Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array.

Lisa M McEwenMeaghan J JonesDavid Tse Shen LinRachel D EdgarLucas T HusquinJulia L MacIsaacKatia E RamadoriAlexander M MorinChristopher F RiderChris CarlstenLluís Quintana-MurciSteve HorvathMichael S Kobor
Published in: Clinical epigenetics (2018)
Here, we have provided evidence that the epigenetic clock is resistant to the lack of 19 CpG sites missing from the EPIC array as well as highlighted the importance of considering the technical variance of the epigenetic when interpreting group differences below the reported error. Furthermore, our study highlights the utility of epigenetic age acceleration measure, the residuals from a linear regression of DNAm age on chronological age, as the resulting values are robust with respect to normalization methods and measurement platforms.
Keyphrases
  • dna methylation
  • gene expression
  • genome wide
  • high resolution
  • high throughput
  • mass spectrometry
  • copy number
  • high density