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Computational modeling of redox enzymes.

Per E M Siegbahn
Published in: FEBS letters (2022)
A computational methodology is briefly described, which appears to be able to accurately describe the mechanisms of redox active enzymes. The method is built on hybrid density functional theory where the inclusion of a fraction of exact exchange is critical. Two examples of where the methodology has been applied are described. The first example is the mechanism for water oxidation in photosystem II, and the second one is the mechanism for N 2 activation by nitrogenase. The mechanism for PSII has obtained very strong support from subsequent experiments. For nitrogenase, the calculations suggest that there should be an activation process prior to catalysis, which is still strongly debated.
Keyphrases
  • density functional theory
  • molecular dynamics
  • electron transfer
  • hydrogen peroxide
  • energy transfer
  • monte carlo