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Phase separation properties of RPA combine high-affinity ssDNA binding with dynamic condensate functions at telomeres.

Vincent SpeggAndreas PanagopoulosMerula StoutAswini KrishnanGiordano ReginatoRalph ImhofBernd RoschitzkiPetr CejkaMatthias Altmeyer
Published in: Nature structural & molecular biology (2023)
RPA has been shown to protect single-stranded DNA (ssDNA) intermediates from instability and breakage. RPA binds ssDNA with sub-nanomolar affinity, yet dynamic turnover is required for downstream ssDNA transactions. How ultrahigh-affinity binding and dynamic turnover are achieved simultaneously is not well understood. Here we reveal that RPA has a strong propensity to assemble into dynamic condensates. In solution, purified RPA phase separates into liquid droplets with fusion and surface wetting behavior. Phase separation is stimulated by sub-stoichiometric amounts of ssDNA, but not RNA or double-stranded DNA, and ssDNA gets selectively enriched in RPA condensates. We find the RPA2 subunit required for condensation and multi-site phosphorylation of the RPA2 N-terminal intrinsically disordered region to regulate RPA self-interaction. Functionally, quantitative proximity proteomics links RPA condensation to telomere clustering and integrity in cancer cells. Collectively, our results suggest that RPA-coated ssDNA is contained in dynamic RPA condensates whose properties are important for genome organization and stability.
Keyphrases
  • binding protein
  • high resolution
  • single molecule
  • nucleic acid
  • cell free
  • dna binding
  • body composition