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Intramolecular and Water Mediated Tautomerism of Solvated Glycine.

Pengchao ZhangAxel Tosello GardiniXuefei XuMichele Parrinello
Published in: Journal of chemical information and modeling (2024)
Understanding tautomerism and characterizing solvent effects on the dynamic processes pose significant challenges. Using enhanced-sampling molecular dynamics based on state-of-the-art deep learning potentials, we investigated the tautomeric equilibria of glycine in water. We observed that the tautomerism between neutral and zwitterionic glycine can occur through both intramolecular and intermolecular proton transfers. The latter proceeds involving a contact anionic-glycine-hydronium ion pair or separate cationic-glycine-hydroxide ion pair. These pathways with comparable barriers contribute almost equally to the reaction flux.
Keyphrases
  • molecular dynamics
  • deep learning
  • density functional theory
  • energy transfer
  • machine learning
  • mass spectrometry
  • convolutional neural network
  • gold nanoparticles
  • single molecule
  • aqueous solution