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DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance.

Michael PayneDalong HuQinning WangGeraldine SullivanRikki M GrahamIrani U RathnayakeAmy V JennisonVitali SintchenkoRuiting Lan
Published in: Bioinformatics (Oxford, England) (2024)
DODGE is freely available at https://github.com/LanLab/dodge and can easily be installed using Conda.
Keyphrases
  • public health
  • machine learning
  • deep learning
  • high throughput
  • loop mediated isothermal amplification
  • copy number
  • real time pcr
  • gene expression
  • dna methylation
  • single cell